March 14, 2008...11:45 am

Mutatons in VLDLR gene in the Quadrupeds from Turkey

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Remember in 2005-06 when there was a whole lot of buzz about the quadrupedal siblings in Turkey? There first was this paper, “Cerebellar hypoplasia and quadrupedal locomotion in humans as a recessive trait mapping to chromosome 17p,” and then there was this paper, “A new syndrome with quadrupedal gait, primitive speech, and severe mental retardation as a live model for human evolution,” which made a big splash… enough of a splash that a NOVA special was made.

John Hawks criticized this all, especially on the merit if this ‘behavior’ is due to genetic mutations, but he also had beef with how the press was handling the implications of these people. I too didn’t like how everyone was calling these modern humans with a syndrome as primitive cavemen, but what can you do?

Of course, as physical anthropologists, we can’t ignore these quadrupeds because they walk on all fours, and some of our closest evolutionary cousins (chimpanzees and gorillas) also walk on all fours. But you can’t say these people reverted back to a more ancestral primate locomotion technique. Chimps and gorillas walk on their knuckles, whereas these people walk plantigrade. Also, they look more strained walking on fours than do our more furry primate brethren, and that makes sense because limb proportions and overall body size of these people still are bipedal in pattern.

Walking on All Fours

Well, it has been pretty quiet since then. We haven’t heard much from the two families in Turkey who walk on all fours, have speech deficiencies, and exhibit hypoplasia of the brain. I think that will all change with this new awesome PNAS paper that just came out recently. The paper, “Mutations in the very low-density lipoprotein receptor VLDLR cause cerebellar hypoplasia and quadrupedal locomotion in humans,” identifies two mutations in the VLDLR gene from members of the family who have this syndrome.

The last author of this new paper, Uner Tan, was actually the guy who published that 2006 paper which got Hawks to say Tan is incorrect in thinking that the language and locomotion disabilities of these quadrupeds in Turkey are genetically linked. Hawks said,

“Human bipedality and human cognition are both highly complex traits involving anatomical, developmental, and behavioral specializations. Each of them involved hundreds, and for cognition I would say thousands, of different genetic changes. There was no small set of macromutations that caused these traits to arise…

….I think it’s really unlikely that a gene that causes cerebellar ataxia was a critical bipedality gene. It may be necessary to walking normally, but it probably (indeed, evidently from the nature of the disorder) is very important to a lot of other things as well. A gene that breaks early brain development is no more likely than other genes to have a specific function role in the development or practice of bipedalism in humans…

…The main point is this: the fact that a gene breaks something doesn’t mean that it was the key gene necessary to create something. Suppose that you want to figure out how a car works. So you look at cars that aren’t working right, and you see what is broken. Now, you will notice that cars run sort of poorly with flat tires, they run with depleted batteries but won’t start, they will run for a bit without motor oil, but then seize up, and so on.

Cerebellar ataxia breaks a whole lot of things. It’s like breaking the crankshaft — the engine might run, but it is going to make a whole lot of noise, and the car isn’t going to move. We may conclude that the crankshaft is necessary for the wheels to move. But does that mean that the crankshaft is the key component of the wheel? Clearly not.

The analogy between cars and organismal development is useful because both systems depend on hierarchical functions. Early things must all work right for later things to develop. When an upstream gene (or part) breaks, it doesn’t mean that downstream things affected by the broken gene were caused by the broken gene.”

Now it seems like Tan et al. have found a gene that affects the development of bipedality and language, as well as a lot of other things. Actually the authors used genome-wide analytic tools to genetically map regions on three different chromosomes that are shared and are responsible for the condition seen in the two different families. Most the most interesting genetic similarity is a homozygoitic 1.3 megabase region of chromosome 9. Within this region, lies the gene VLDLR.

VLDLR is a gene that encodes a low density lipoprotein receptor. Its widely found in heart, skeletal muscle, and adipose tissue and thought to function in fatty acid metabolism, bringing in different molecules like enzymes and transporters into the cell. VLDLR has been actually identified as a critical component of the reelin signaling pathway, a cascade of events that develop the central nervous system. So it is not exclusively expressed in heart, muscle, and fat. Any deleterious mutation in VLDLR would ultimately effect how the nervous system is made and how it functions. Since locomotion and language are controlled by the central nervous system, you can begin to see how important VLDLR is. Aside from neural development, the authors hypothesize that VLDLR functions in positioning cells in the brain, and maturing the cerebellum so that bipedalism can function.

The authors decided to hone in on VLDLR. They made a pedigree chart that shows the affected individuals, and sequenced the VLDLR gene from affected individuals in both families. They were able to identify two mutant alleles, specific to each family, that deviated with the wild type VLDLR gene. Affected individuals in the first family carried a swap of a cytosine to a thymine in position 769 of the gene. This is a single nucleotide polymorphism (SNP) that caused a nonsense mutation, resulting in a premature stop codon. The second family actually had a deletion of a thymine in position 2339. This is also a single nucleotide SNP. Had this deletion been in 3 bases, carriers of this allele may have had a functioning VLDLR receptor, but since it involved a single base, a frame shift occurred and basically messed up everything downstream. I’ve taken out the chormatogram from the sequencing to show you what the mutations look like:

VLDLR sequence comparison of two quadrupedal families from Turkey

The authors confirmed the extent of these mutations using qPCR. They were able to show how the early stop and frameshift mutations are both in the part of resultant protein that binds reelin, and ultimately are not able to begin the reelin signal transduction.

This paper is really elegant! It is very simple and powerful. They were able to correlate a phenotype to a mutation in a important gene that affects how the nervous system is developed, and how it functions. Since these people affected by Unertan syndrome have serious neurological disorders, it is a pretty clear genotype-phenotype association. I feel Tan and crew are vindicated from Hawks criticisms.

    Ozcelik, T., Akarsu, N., Uz, E., Caglayan, S., Gulsuner, S., Onat, O.E., Tan, M., Tan, U. (2008). Mutations in the very low-density lipoprotein receptor VLDLR cause cerebellar hypoplasia and quadrupedal locomotion in humans. Proceedings of the National Academy of Sciences DOI: 10.1073/pnas.0710010105
    TAN, U. (2006). A NEW SYNDROME WITH QUADRUPEDAL GAIT, PRIMITIVE SPEECH, AND SEVERE MENTAL RETARDATION AS A LIVE MODEL FOR HUMAN EVOLUTION. International Journal of Neuroscience, 116(3), 361-369. DOI: 10.1080/00207450500455330
    Turkmen, S. (2005). Cerebellar hypoplasia and quadrupedal locomotion in humans as a recessive trait mapping to chromosome 17p. Journal of Medical Genetics, 43(5), 461-464. DOI: 10.1136/jmg.2005.040030

13 Comments

  • No..
    The first was the following paper:

    Uner Tan (2005).Unertan syndrome: quadrupedality, primitive language, and severe mental retardation; A new theory on the evolution of human mind. Neuroquantology, 2005, issue 4, page 250-255.

  • There’s a long-ago-described disorder called “VLDLR-associated cerebellar hypoplasia”, previously “Disequilibrium syndrome”.

    http://en.wikipedia.org/wiki/VLDLR-associated_cerebellar_hypoplasia

    I wonder that’s the difference between this and the Unertan Syndrome and how they may relate.

  • Uner,

    Thanks for clarification. I shoulda researched more and tracked down the first paper. I just posted on what I read and had in my possession.

    Anyways, thanks again, I’ll be sure to read your Neuroquantology paper. And also, good job on this PNAS, you and your team of authors made and excellent scientific discovery and presented it in a very clear and concise manner!

    Kambiz

  • CopperKettle,

    That’s very interesting, it is no surprise that VLDLRCH, where the VLDLR gene is disrupted, is cause for mental retardation and hypoplasia of the cerebellum. I too wonder then if Unertan Syndrome is unique, that would be very interesting?

    As you know the cerebellum integrates sensory perception and motor control. Seems like a immature cerebellum would most certainly have affects on balance and locomotion.

    Thanks for the comment, I wonder if Uner Tan and any of the others of this paper have heard of VLDLRCH before and what they think of it? Actually, any physicians, neurologists, out there wanna chime in on if VLDLRCH and Unertan syndrome are the same thing?

    Kambiz

  • Thank you very much Dear Kambiz..
    All the best,
    Uner

  • Dear Kambiz:
    Turkmen et al. have published the updated article in the Journal of Medical Genetics in 2006 (43: 461-464). This is the real reference, since the first online publication won’t be valid after the publication of the updated article in the journal. For instance our article in online PNAS, won’t be valid after its publication in the Journal “PNAS (USA). Acoordingly, we will use the Journal PNAS in references, not the online paper.
    Best,
    Uner

  • Hi, Kambiz —

    I think you’re missing my argument. It’s certainly plausible that these ataxia cases have a genetic cause (or causes), and the genes that are involved might be interesting.

    But the hypothesis that these genes were themselves involved with the origin of bipedality (or language) requires different evidence. In particular, it requires a comparison with chimpanzees or other hominoids, showing that the human form exhibits functional changes. Even better would be evidence of selection on the gene within the human lineage.

    That is what we have for FoxP2, for example — not only is it implicated in the pathological form of SLI, but it is also clearly different between humans and other hominoids, and shows good evidence of selection on the human lineage. And even then, we still don’t know what it does or why it was selected.

    A contrary example is FGFR3, some mutations of which cause achondroplasia. This developmental reduction in body size may be compared to the vast increase in body size that evolved during human evolution. But as far as we know, that increase did not involve any adaptive changes to FGFR3, and there is no particular evidence of selection on the gene in the human lineage.

    So my point is that studying the pathology is *not* studying the origins of bipedality. There’s no necessary connection between the two, nor is there any expectation that we will learn about one from the other.

    I would say that the PNAS paper puts the situation very well — it says in the conclusion that the identification of VLDLR-based pathologies may lead to more insight about the neural mechanisms that maintain gait in humans.

  • I’m not a specialist, but I’ve partly read John Hawk’s critique of 2006 and so far John’s arguments seem justified to me, and I see no reason why the PNAS paper must refute them. Bipedalism and intelligence are indeed must depend on many genes.

    As I understood, there are two genetic loci linked to the syndrome. One gene has been found, and turned out to be the gene linked previously to Disequilibrium syndrome, later renamed VLDLRCH. I will wait for an answer whether some cases of Unertan syndrome might really be “rediscovered” VLDLRCH, which is described in Hutterite communities, for example. There must exist descriptions of Hutterite cases, why not compare them with Turkish families’ members affected by the syndrome. It is interesting what will be the second gene, that on the chromosome 17..

    I was interested in VLDLRCH because VLDLR, along with ApoER2, is one of the reelin receptors, and reelin brain levels are reported to be consistently low in cases of schizophrenia and psychotic bipolar disorder. Reading about molecular mechanisms of schizophrenia is a kind of my hobby. I was adding some info to the reelin-related wikipedia pages now and then, and only yesterday struck upon the quaint “Unertan syndrome”.

  • P.S. I’ve found that in the Tan’s paper “Unertan syndrome: a case series demonstrating human devolution” the differences between UTC and DES\VLDLRCH are indeed discussed:

    “UTS and DES

    Although the UTS is proven to be a unique syndrome not described before in the scientific literature, there is a syndrome which should be discussed with regard to the UTS. The disequilibrium syndrome (DES) was first introduced into the scientific literature by Hagberg, Sanner, and Steen (1972). Later, Sanner (1973) re-studied this syndrome and provided evidence for an autosomal recessive pattern of inheritance since many patients in one region of Sweden originated from parental consanguinity. The DES is also found among the Hutterites of Montana (Schurig et al., 1981; Palister & Opitz, 1986). Similar cases were later reported by Glass, Boycott, Adams, et al. (2005) in 12 Hutterites, similar to the former clan, except that the latter study included MRI scans.

    There are significant differences between the DES and the UTS. Those affected with the UTS habitually walk in a quadripedal fashion without any sign of dysequilibrium, whereas those with the DES habitually walk bipedally with a broad-based ataxic gait due to cerebellar hypoplasia. This is the most important difference between the UTS and the DES. Although both syndromes result from autosomal recessive inheritance due to intra-familial marriages, the genetic defect differs. That is, the gene responsible for the DES is localized to chromosome region 9p24 (Boycott et al., 2007), while the gene responsible for the UTS is localized to chromosome 17p, at least in the affected individuals of the first family described (Turkmen et al., 2006), which has been confirmed by our collaborative work with Tayfun Ozçelik at Bilkent University in Ankara, Turkey (unpublished studies). However, we were unable to confirm this result in the affected individuals of the second and third families, suggesting that the UTS may be a multigenic disorder. Speech is at the very primitive level in the affected members of the first family. They cannot name objects in everyday use, generally understanding only themselves; their neighbors cannot understand them. The affected individuals of the second and third families do not use a language. To communicate, they use only one or two sounds, while those affected with the DES use their mother language, which is, however, dysarthric and unintelligible. There is mild-to-moderate mental retardation in the DES, but there is severe mental retardation with no conscious experience at all in patients with the UTS. Furthermore, there was no short stature in subjects with the UTS, while most of the subjects with the DES exhibit short stature. There was no intention tremor in most of those affected with the UTS, while there was intention tremors in most affected with the DES. The common features between the UTS and the DES include: autosomal recessive inheritance, exaggerated deep tendon reflexes (primarily in the lower extremities), and rarely, epilepsy. Thus, the UTS and the DES are different pathologic conditions, exhibiting different clinical signs and symptoms. The MRI scans are completely similar in the DES and in some affected individuals of the first and third families with the UTS, i.e., the inferior cerebellum and the inferior vermis being absent with a mild gyral simplification in both the DES and the UTS. However, these structures were nearly normal in the affected individuals of the second family (Tan, 2006b). Moreover, the cerebro-cerebellar structures were completely normal in the MRI scans of an individual exhibiting only the main symptom of the UTS, i.e., habitual walking on all four extremities without any mental disturbances (Tan, 2007). The integrity of the vestibular system has not been studied thus far in those affected with the DES. In contrast, the vestibular system was tested using Barany’s caloric nystagmus test in the affected individuals of the first family (Tan et al., 2007), which indicated a defect in the central vestibular system, comprising the neural nuclei in the brain stem responsible for postural reflexes, gravity-dependent reflexes, and spatial orientation. There was a defect in the peripheral vestibular system in the affected individuals of the second family (Tan et al., 2007), i.e., damage to the nerve of the inner ear which controls balance. Interestingly, the peripheral and central vestibular systems were normal in the affected individuals of the third family presented in the present work. These results exclude the possibility that a defective vestibular system would be responsible for the UTS. In sum, the above mentioned differences between the UTS and the DES suggest that these two disorders may be entirely different with respect to clinical and central neural mechanisms.”

  • Thank you very much Dear CopperKettle for your excellent summary on differences between UTS and DES.
    All the best,
    Uner

  • Still Reelin’ from all these infos. Splendidly written article. Homozygosity in chr 9 raises the doubt that these may be due to consanguineous relationships involved, in addition to frame-shift or non-sense mutations.
    It seems that reelin signalling pathway, that gets modified via the instruction of VLDLR, will reveal many secrets of embryology, establishing “ontogeny repeats phylogeny” in a brand new light.

  • There are reports of feral children, raised by animals, who have also been found walking on all fours. Is it possible the Turkish individuals were simply neglected at a crucial developmental stage? Isn’t walking upright an activity that is learned?

  • Nicholas Humphrey

    I’m glad to see this discussion developing. Here, below, is a copy of a message I’ve sent to the lead author of the PNAS paper.

    Best, Nicholas Humphrey

    **

    As you will know, I and my colleagues from England published an early account of the syndrome in the Ulas family (your family B) in 2005.

    http://www.lse.ac.uk/collections/CPNSS/pdf/DP_withCoverPages/DP77/DP7705.pdf

    Since then I have been involved with Stefan Mundlos in researching your family A which was first “discovered” by us as a result of the BBC TV documentary. We have also more recently researched a family with a similar syndrome in Iraq. A report of the Iraqi family “Life on all fours” appeared in the London Times in November last year.

    http://www.timesonline.co.uk/tol/life_and_style/health/article2671426.ece

    We (Mundlos and his team) have a paper in press in EJHG which describes our own findings with your family A. I’m glad to say we are in complete agreement with you about the genetics of family A. We will shortly also be publishing our genetic findings with the Iraqi family, in whom we have found yet another different mutation.

    Our own conclusions about the origins of quadrupedal locomotion are different from yours. We see it as an adaptive compensation for problems with balance (caused by congenital cerebellar hypoplasia in some cases , or in other cases that we know of by later-onset conditions such as Parkinsonism). We do not believe that so-called “Unertan syndrome” is a useful diagnostic category, or that it has the scientific significance that Tan wants to attach to it (evidence of “backwards evolution”).

    However we still regard these cases as being of great interest from the point of view of human development. They provide “text-book cases” of how genes and environment interact to determine the phenotypic outcome, and of how disparate influences can lead to a convergence on an unusual “attractor state” — namely, in this case palmigrade quadrupedalism. We also think that the fact that palmigrade quadrupedalism is still in modern humans an attractor state may tell us something about human pre-history (perhaps our ancestors were indeed palm-walkers rather than knuckle-walkers).


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