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	<title>Comments on: The Complete Vindija 33.16 Neandertal Mitochondrial Genome Announced in Cell</title>
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	<link>http://anthropology.net/2008/08/07/the-complete-vindiji-3316-neandertal-mitochondrial-genome-announced-in-cell/</link>
	<description>Beyond bones &#38; stones</description>
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		<title>By: Shi Huang</title>
		<link>http://anthropology.net/2008/08/07/the-complete-vindiji-3316-neandertal-mitochondrial-genome-announced-in-cell/#comment-12298</link>
		<dc:creator>Shi Huang</dc:creator>
		<pubDate>Fri, 29 Aug 2008 23:21:31 +0000</pubDate>
		<guid isPermaLink="false">http://anthropologynet.wordpress.com/?p=1115#comment-12298</guid>
		<description>The paper confirmed my earlier paper on neanderthals, dinosaurs, and mastodons.

&quot;Ancient Fossil Specimens of Extinct Species Are Genetically More Distant to an Outgroup than Extant Sister Species Are&quot;  
Rev. Biol. 2008, 101: 93-108</description>
		<content:encoded><![CDATA[<p>The paper confirmed my earlier paper on neanderthals, dinosaurs, and mastodons.</p>
<p>&#8220;Ancient Fossil Specimens of Extinct Species Are Genetically More Distant to an Outgroup than Extant Sister Species Are&#8221;<br />
Rev. Biol. 2008, 101: 93-108</p>
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		<title>By: Evolution question. - Page 6 - Interfaith forums</title>
		<link>http://anthropology.net/2008/08/07/the-complete-vindiji-3316-neandertal-mitochondrial-genome-announced-in-cell/#comment-12250</link>
		<dc:creator>Evolution question. - Page 6 - Interfaith forums</dc:creator>
		<pubDate>Fri, 22 Aug 2008 05:49:16 +0000</pubDate>
		<guid isPermaLink="false">http://anthropologynet.wordpress.com/?p=1115#comment-12250</guid>
		<description></description>
		<content:encoded><![CDATA[<p>[...] between humans and Neandertals, with a 95% credibility interval of 520,000–800,000 years ago.    The Complete Vindija 33.16 Neandertal Mitochondrial Genome Announced in Cell « Anthropology.net   [...]</p>
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		<title>By: terryt</title>
		<link>http://anthropology.net/2008/08/07/the-complete-vindiji-3316-neandertal-mitochondrial-genome-announced-in-cell/#comment-12086</link>
		<dc:creator>terryt</dc:creator>
		<pubDate>Fri, 15 Aug 2008 04:12:53 +0000</pubDate>
		<guid isPermaLink="false">http://anthropologynet.wordpress.com/?p=1115#comment-12086</guid>
		<description>Several problems here Maju.  

&quot;Thatâ€™s what I gather from the archaeological record&quot;.  It&#039;s quite on the cards that Homo in Africa owes part of its ancestry to something like Homo heidelbergensis who moved into that continent from outside.  This would easily fit a half million year split between modern and Neanderthal.  And after all other animals have been moving in and out of Africa over the same time period.  

&quot;Sounds weird. Partly for the use of the Biblical terms &#039;Adam and Eve&#039; â€ť.  I think we can safely say that anyone who believes we descend from just two ancestors has been heavily influenced by biblical mythology.  

&quot;a pre-Toba OOA scenario could be realistic. That also implies that MRCA estimates should be moved backwards in time&quot;.  It could just mean that modern humans moved out of Africa before the modern Y- and mtDNA haplogroups appeared.  The modern haplogroups followed, rather than led, the out of Africa movement.  

&quot;the main engine of speciation is isolation, not introgression&quot;. I doubt it.  Isolation leads rapidly to inbreeding which is usually fatal for a small population.  

&quot;Hybridization would mean that the proto-species were in continuous contact&quot;.  Not necessarily, periodic would do.  I&#039;d suggest it&#039;s quite common for subspecies to make contact as their respective ranges expand and contract over time.  There&#039;s no reason at all to believe speciation is an instantaneous phenomenon.  After all an individual with an advantageous mutation must be able to breed with other members of its population, otherwise the mutation has no chance at all of surviving.  

&quot;the most likely cause of Bonobo-Chimp split&quot; is not necessarily the formation of the Congo River.  An extremely dry period would be sufficient  to let a sub-population across, separating the species.  Rivers do dry up at times.  The world hasn&#039;t always been as it has been during our individual lifetimes.</description>
		<content:encoded><![CDATA[<p>Several problems here Maju.  </p>
<p>&#8220;Thatâ€™s what I gather from the archaeological record&#8221;.  It&#8217;s quite on the cards that Homo in Africa owes part of its ancestry to something like Homo heidelbergensis who moved into that continent from outside.  This would easily fit a half million year split between modern and Neanderthal.  And after all other animals have been moving in and out of Africa over the same time period.  </p>
<p>&#8220;Sounds weird. Partly for the use of the Biblical terms &#8216;Adam and Eve&#8217; â€ť.  I think we can safely say that anyone who believes we descend from just two ancestors has been heavily influenced by biblical mythology.  </p>
<p>&#8220;a pre-Toba OOA scenario could be realistic. That also implies that MRCA estimates should be moved backwards in time&#8221;.  It could just mean that modern humans moved out of Africa before the modern Y- and mtDNA haplogroups appeared.  The modern haplogroups followed, rather than led, the out of Africa movement.  </p>
<p>&#8220;the main engine of speciation is isolation, not introgression&#8221;. I doubt it.  Isolation leads rapidly to inbreeding which is usually fatal for a small population.  </p>
<p>&#8220;Hybridization would mean that the proto-species were in continuous contact&#8221;.  Not necessarily, periodic would do.  I&#8217;d suggest it&#8217;s quite common for subspecies to make contact as their respective ranges expand and contract over time.  There&#8217;s no reason at all to believe speciation is an instantaneous phenomenon.  After all an individual with an advantageous mutation must be able to breed with other members of its population, otherwise the mutation has no chance at all of surviving.  </p>
<p>&#8220;the most likely cause of Bonobo-Chimp split&#8221; is not necessarily the formation of the Congo River.  An extremely dry period would be sufficient  to let a sub-population across, separating the species.  Rivers do dry up at times.  The world hasn&#8217;t always been as it has been during our individual lifetimes.</p>
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		<title>By: Luis</title>
		<link>http://anthropology.net/2008/08/07/the-complete-vindiji-3316-neandertal-mitochondrial-genome-announced-in-cell/#comment-12072</link>
		<dc:creator>Luis</dc:creator>
		<pubDate>Thu, 14 Aug 2008 14:14:34 +0000</pubDate>
		<guid isPermaLink="false">http://anthropologynet.wordpress.com/?p=1115#comment-12072</guid>
		<description>&lt;i&gt;I presume itâ€™s a mispront and you meant 1 million years&lt;/i&gt;

Sure, sorry.

&lt;i&gt;Because thereâ€™s no need to believe there have been just two genetic expansions during our evolution: an original H. erectus expansion and a much more recent expansion that spread modern human mtDNA haplogroups around the world.&lt;/i&gt;

That&#039;s what I gather from the archaeological record.

&lt;i&gt;Thereâ€™s also no need to assume that the mtDNA split between Neanderthals and modern humans happened when Neanderthalsâ€™ ancestors moved out of Africa. It is just as possible, in fact I believe more likely, that the split occurred when Adam and Eveâ€™s ancestors moved into Africa from Asia.&lt;/i&gt;

Sounds weird. Partly for the use of the Biblical terms &quot;Adam and Eve&quot; without contextualization but specially because the most complete archaeological record of Homo spp. is in Africa, where it probably evolved from local variants H. erectus. 

You were just suggesting at Leherensuge that my hypothesis of a pre-Toba OOA scenario could be realistic. That also implies that MRCA estimates should be moved backwards in time, what would perfectly account for an older Neander-Sapiens divergence (as well as for geological indications of earlier Chimp-Bonobo split than currently assumed commonly). 

&lt;i&gt;In fact the evidence demonstrates that our evolution has been no different to that of any other species: various genes spread through populations altering phenotype.&lt;/i&gt;

As we have already discussed elsewhere, the main engine of speciation is isolation, not introgression. Introgression can happen but has nothing to do with speciation actually. 

&lt;i&gt;Research has shown, and common sense tells us, that this split was not instantaneous. It may have taken 4 million years, with several periods of hybridisation.&lt;/i&gt;

Hybridation or introgression? Hybridization would mean that the proto-species were in continuous contact (and contact of sexual nature) but considering the very different habitat types of our respective branches (we specialized in open terrain, chimps in the jungle) I find massive hybridation most unlikely. 

&lt;i&gt;Therefore it is quite possible that humans descend from an ape that walked upright 10 or more million years ago but their mtDNA divergence goes back just to 6-8 million years.&lt;/i&gt;

But based on the formation of Congo river basin, which was the most likely cause of Bonobo-Chimp split (they do not have different ecological niches, just different geography) , the actual divergence date should be at least 8 million years old, possibly even older. 

Therefore I tend to think that all MRCA estimates demand a correction of maybe +30% and at least +15%.</description>
		<content:encoded><![CDATA[<p><i>I presume itâ€™s a mispront and you meant 1 million years</i></p>
<p>Sure, sorry.</p>
<p><i>Because thereâ€™s no need to believe there have been just two genetic expansions during our evolution: an original H. erectus expansion and a much more recent expansion that spread modern human mtDNA haplogroups around the world.</i></p>
<p>That&#8217;s what I gather from the archaeological record.</p>
<p><i>Thereâ€™s also no need to assume that the mtDNA split between Neanderthals and modern humans happened when Neanderthalsâ€™ ancestors moved out of Africa. It is just as possible, in fact I believe more likely, that the split occurred when Adam and Eveâ€™s ancestors moved into Africa from Asia.</i></p>
<p>Sounds weird. Partly for the use of the Biblical terms &#8220;Adam and Eve&#8221; without contextualization but specially because the most complete archaeological record of Homo spp. is in Africa, where it probably evolved from local variants H. erectus. </p>
<p>You were just suggesting at Leherensuge that my hypothesis of a pre-Toba OOA scenario could be realistic. That also implies that MRCA estimates should be moved backwards in time, what would perfectly account for an older Neander-Sapiens divergence (as well as for geological indications of earlier Chimp-Bonobo split than currently assumed commonly). </p>
<p><i>In fact the evidence demonstrates that our evolution has been no different to that of any other species: various genes spread through populations altering phenotype.</i></p>
<p>As we have already discussed elsewhere, the main engine of speciation is isolation, not introgression. Introgression can happen but has nothing to do with speciation actually. </p>
<p><i>Research has shown, and common sense tells us, that this split was not instantaneous. It may have taken 4 million years, with several periods of hybridisation.</i></p>
<p>Hybridation or introgression? Hybridization would mean that the proto-species were in continuous contact (and contact of sexual nature) but considering the very different habitat types of our respective branches (we specialized in open terrain, chimps in the jungle) I find massive hybridation most unlikely. </p>
<p><i>Therefore it is quite possible that humans descend from an ape that walked upright 10 or more million years ago but their mtDNA divergence goes back just to 6-8 million years.</i></p>
<p>But based on the formation of Congo river basin, which was the most likely cause of Bonobo-Chimp split (they do not have different ecological niches, just different geography) , the actual divergence date should be at least 8 million years old, possibly even older. </p>
<p>Therefore I tend to think that all MRCA estimates demand a correction of maybe +30% and at least +15%.</p>
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		<title>By: Interesting News in the World of Genetic Genealogy &#187; The Genetic Genealogist</title>
		<link>http://anthropology.net/2008/08/07/the-complete-vindiji-3316-neandertal-mitochondrial-genome-announced-in-cell/#comment-12052</link>
		<dc:creator>Interesting News in the World of Genetic Genealogy &#187; The Genetic Genealogist</dc:creator>
		<pubDate>Tue, 12 Aug 2008 07:04:40 +0000</pubDate>
		<guid isPermaLink="false">http://anthropologynet.wordpress.com/?p=1115#comment-12052</guid>
		<description>[...] more information see john hawks weblog, Genetic Archaeology, Genea-Musings (with a humorous twist), Anthropology.net, and The Spittoon.Â  The original article is in Cell.Â  Turns out there are roughly 206 differences [...]</description>
		<content:encoded><![CDATA[<p>[...] more information see john hawks weblog, Genetic Archaeology, Genea-Musings (with a humorous twist), Anthropology.net, and The Spittoon.Â  The original article is in Cell.Â  Turns out there are roughly 206 differences [...]</p>
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		<title>By: terryt</title>
		<link>http://anthropology.net/2008/08/07/the-complete-vindiji-3316-neandertal-mitochondrial-genome-announced-in-cell/#comment-12042</link>
		<dc:creator>terryt</dc:creator>
		<pubDate>Mon, 11 Aug 2008 05:17:58 +0000</pubDate>
		<guid isPermaLink="false">http://anthropologynet.wordpress.com/?p=1115#comment-12042</guid>
		<description>&quot;H. erectus ... colonized Eurasia some 1 billion/900,000 years ago and that is probably the actual age of Neander-Sapiens split&quot;.  I presume it&#039;s a mispront and you meant 1 million years.  

But there&#039;s absolutely no reason we can&#039;t accept a half million years separation between modern humans and Neanderthals as being roughly correct.  Because there&#039;s no need to believe there have been just two genetic expansions during our evolution: an original H. erectus expansion and a much more recent expansion that spread modern human mtDNA haplogroups around the world.  

There&#039;s also no need to assume that the mtDNA split between Neanderthals and modern humans happened when Neanderthals&#039; ancestors moved out of Africa.  It is just as possible, in fact I believe more likely, that the split occurred when Adam and Eve&#039;s ancestors moved into Africa from Asia.  

In fact the evidence demonstrates that our evolution has been no different to that of any other species: various genes spread through populations altering phenotype.  And genetic change is most likely to first become fixed as a result of inbreeding, usually in a geographical extremity of a species&#039; distribution.  

Regarding the chimp/human split.  Research has shown, and common sense tells us, that this split was not instantaneous.  It may have taken 4 million years, with several periods of hybridisation.  Therefore it is quite possible that humans descend from an ape that walked upright 10 or more million years ago but their mtDNA divergence goes back just to 6-8 million years.</description>
		<content:encoded><![CDATA[<p>&#8220;H. erectus &#8230; colonized Eurasia some 1 billion/900,000 years ago and that is probably the actual age of Neander-Sapiens split&#8221;.  I presume it&#8217;s a mispront and you meant 1 million years.  </p>
<p>But there&#8217;s absolutely no reason we can&#8217;t accept a half million years separation between modern humans and Neanderthals as being roughly correct.  Because there&#8217;s no need to believe there have been just two genetic expansions during our evolution: an original H. erectus expansion and a much more recent expansion that spread modern human mtDNA haplogroups around the world.  </p>
<p>There&#8217;s also no need to assume that the mtDNA split between Neanderthals and modern humans happened when Neanderthals&#8217; ancestors moved out of Africa.  It is just as possible, in fact I believe more likely, that the split occurred when Adam and Eve&#8217;s ancestors moved into Africa from Asia.  </p>
<p>In fact the evidence demonstrates that our evolution has been no different to that of any other species: various genes spread through populations altering phenotype.  And genetic change is most likely to first become fixed as a result of inbreeding, usually in a geographical extremity of a species&#8217; distribution.  </p>
<p>Regarding the chimp/human split.  Research has shown, and common sense tells us, that this split was not instantaneous.  It may have taken 4 million years, with several periods of hybridisation.  Therefore it is quite possible that humans descend from an ape that walked upright 10 or more million years ago but their mtDNA divergence goes back just to 6-8 million years.</p>
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		<title>By: Luis</title>
		<link>http://anthropology.net/2008/08/07/the-complete-vindiji-3316-neandertal-mitochondrial-genome-announced-in-cell/#comment-12024</link>
		<dc:creator>Luis</dc:creator>
		<pubDate>Sat, 09 Aug 2008 11:49:31 +0000</pubDate>
		<guid isPermaLink="false">http://anthropologynet.wordpress.com/?p=1115#comment-12024</guid>
		<description>&lt;i&gt;I wonder where the the 5oo,ooo years ago Neanderthals laid down there bones to rest?&lt;/i&gt;

I think that means H. antecessor. Neanderthals as such are only like 200,000 years old. 

&lt;i&gt;Also, I wonder about the 6-8 million year estimation of the divergence - I hear of a fossilized ape that walked upright 10 or more million years ago - seems to me last common ancestor would be beyond the 6-8 and therefore the divergence would be considerably older, after all, neaanderthals are extremely differnent!&lt;/i&gt;

I haven&#039;t read about that walking ape you mention nor I know if it&#039;s our ancestor (and therefore Neanderthal&#039;s too). But I am also concerned about the 7 million years Pan-Homo divergence estimate (based only on fossil record) being too recent and therefore not realistic. 

The hominins once known generally as H. erectus (and now subdivided in several species) colonized Eurasia some 1 billion/900,000 years ago and that is probably the actual age of Neander-Sapiens split. Also the formation of the Congo river, most likely cause of the Chimpanzee-Bonobo split is quite older than the MC estimate for the same event. To me this strongly suggests that the best MC estimates should be corrected towards older dates by a factor of 20-30%.</description>
		<content:encoded><![CDATA[<p><i>I wonder where the the 5oo,ooo years ago Neanderthals laid down there bones to rest?</i></p>
<p>I think that means H. antecessor. Neanderthals as such are only like 200,000 years old. </p>
<p><i>Also, I wonder about the 6-8 million year estimation of the divergence &#8211; I hear of a fossilized ape that walked upright 10 or more million years ago &#8211; seems to me last common ancestor would be beyond the 6-8 and therefore the divergence would be considerably older, after all, neaanderthals are extremely differnent!</i></p>
<p>I haven&#8217;t read about that walking ape you mention nor I know if it&#8217;s our ancestor (and therefore Neanderthal&#8217;s too). But I am also concerned about the 7 million years Pan-Homo divergence estimate (based only on fossil record) being too recent and therefore not realistic. </p>
<p>The hominins once known generally as H. erectus (and now subdivided in several species) colonized Eurasia some 1 billion/900,000 years ago and that is probably the actual age of Neander-Sapiens split. Also the formation of the Congo river, most likely cause of the Chimpanzee-Bonobo split is quite older than the MC estimate for the same event. To me this strongly suggests that the best MC estimates should be corrected towards older dates by a factor of 20-30%.</p>
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		<title>By: hal barton</title>
		<link>http://anthropology.net/2008/08/07/the-complete-vindiji-3316-neandertal-mitochondrial-genome-announced-in-cell/#comment-12023</link>
		<dc:creator>hal barton</dc:creator>
		<pubDate>Sat, 09 Aug 2008 05:31:50 +0000</pubDate>
		<guid isPermaLink="false">http://anthropologynet.wordpress.com/?p=1115#comment-12023</guid>
		<description>Using the 6-8 million year old divergence time of chimpanzees. They estimated a 660,000 year old divergence time between humans and Neandertals - with a 95% credibility interval of 520,000â€“800,000 years ago?  I wonder where the the 5oo,ooo years ago Neanderthals laid down there bones to rest?  Also, I wonder about the 6-8 million year estimation of the divergence - I hear of a fossilized ape that walked upright 10 or more million years ago - seems to me last common ancestor would be beyond the 6-8 and therefore the divergence would be considerably older, after all, neaanderthals are extremely differnent!</description>
		<content:encoded><![CDATA[<p>Using the 6-8 million year old divergence time of chimpanzees. They estimated a 660,000 year old divergence time between humans and Neandertals &#8211; with a 95% credibility interval of 520,000â€“800,000 years ago?  I wonder where the the 5oo,ooo years ago Neanderthals laid down there bones to rest?  Also, I wonder about the 6-8 million year estimation of the divergence &#8211; I hear of a fossilized ape that walked upright 10 or more million years ago &#8211; seems to me last common ancestor would be beyond the 6-8 and therefore the divergence would be considerably older, after all, neaanderthals are extremely differnent!</p>
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		<title>By: Kambiz Kamrani</title>
		<link>http://anthropology.net/2008/08/07/the-complete-vindiji-3316-neandertal-mitochondrial-genome-announced-in-cell/#comment-12020</link>
		<dc:creator>Kambiz Kamrani</dc:creator>
		<pubDate>Fri, 08 Aug 2008 23:42:30 +0000</pubDate>
		<guid isPermaLink="false">http://anthropologynet.wordpress.com/?p=1115#comment-12020</guid>
		<description>FreeToThink,

Please don&#039;t abuse the comment system for this sort of inquiry. Your question is unrelated to Neandertal genome sequencing. If you have another request in the future, ask by sending an email using this &lt;a href=&quot;/contact&quot; rel=&quot;nofollow&quot;&gt;comment form&lt;/a&gt;, and I&#039;ll be more than happy to help.

Kambiz</description>
		<content:encoded><![CDATA[<p>FreeToThink,</p>
<p>Please don&#8217;t abuse the comment system for this sort of inquiry. Your question is unrelated to Neandertal genome sequencing. If you have another request in the future, ask by sending an email using this <a href="/contact" rel="nofollow">comment form</a>, and I&#8217;ll be more than happy to help.</p>
<p>Kambiz</p>
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		<title>By: FreeToThink</title>
		<link>http://anthropology.net/2008/08/07/the-complete-vindiji-3316-neandertal-mitochondrial-genome-announced-in-cell/#comment-12019</link>
		<dc:creator>FreeToThink</dc:creator>
		<pubDate>Fri, 08 Aug 2008 23:39:17 +0000</pubDate>
		<guid isPermaLink="false">http://anthropologynet.wordpress.com/?p=1115#comment-12019</guid>
		<description>Do you have any links to studies that have been done tracing the roots of South American people both present day and ancient civ&#039;s?  Thank you.</description>
		<content:encoded><![CDATA[<p>Do you have any links to studies that have been done tracing the roots of South American people both present day and ancient civ&#8217;s?  Thank you.</p>
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